HMMER 3.3.2-gompi-2021aHMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.
Accessing HMMER 3.3.2-gompi-2021a
To load the module for HMMER 3.3.2-gompi-2021a please use this command on Baskerville:
module load bask-apps/live
module load HMMER/3.3.2-gompi-2021a
Bask Apps Env
For more information visit the HMMER website.
This version of HMMER has a direct dependency on: gompi/2021a
This version of HMMER is a direct dependent of: AlphaFold/2.2.2-foss-2021a-CUDA-11.3.1
Last modified on 22nd August 2022