Installed Applications

Applications available on Baskerville.

Application Current Version Bask Apps Env
ABAQUS 2021-hotfix-2117 test
Abseil 20230125.2-GCCcore-12.2.0 live
aiohttp 3.8.3-GCCcore-11.3.0 live
AlphaFold 2.2.2-foss-2021a-CUDA-11.3.1 live
alsa-lib 1.2.6-GCCcore-10.2.0 live
alsa-lib 1.2.6-GCCcore-10.2.0 test
ant 1.10.11-Java-11 test
archspec 0.1.2-GCCcore-10.2.0 live
archspec 0.1.2-GCCcore-10.2.0 test
AreTomo 1.3.4-GCCcore-10.3.0 live
aria2 1.35.0-GCCcore-10.3.0 live
Arm-Forge 22.0.3-foss-2021a live
Arrow 6.0.0-foss-2021a live
ASE 3.22.0-foss-2021a live
at-spi2-atk 2.38.0-GCCcore-10.3.0 live
at-spi2-core 2.40.2-GCCcore-10.3.0 live
ATK 2.38.0-GCCcore-11.3.0 live
Autoconf 2.71-GCCcore-12.3.0 live
Automake 1.16.5-GCCcore-12.3.0 live
Autotools 20220317-GCCcore-12.3.0 live
Bazel 3.7.2-GCCcore-10.3.0 live
BeautifulSoup 4.10.0-GCCcore-11.3.0 live
binutils 2.40-GCCcore-12.3.0 live
Biopython 1.79-foss-2021a live
Bison 3.8.2 live
BLIS 0.9.0-GCC-12.3.0 live
bokeh 2.4.3-foss-2022a live
Boost 1.76.0-GCC-10.3.0 live
Boost 1.76.0-GCC-10.3.0 test
Brotli 1.0.9-GCCcore-12.2.0 live
build 0.10.0-foss-2021a live
Bullet3 20210920-fosscuda-2020b live
Bullet3 20210920-fosscuda-2020b test
bzip2 1.0.8-GCCcore-12.3.0 live
c-ares 1.17.2-GCCcore-10.3.0 live
cairo 1.17.4-GCCcore-11.3.0 live
Check 0.15.2-GCCcore-10.2.0 live
Check 0.15.2-GCCcore-10.2.0 test
cisTEM 2-alpha-166-325181e live
Clang 13.0.1-GCCcore-11.3.0 live
CMake 3.26.3-GCCcore-12.3.0 live
cpplint 1.6.1-foss-2021a live
CppUnit 1.15.1-GCCcore-10.3.0 live
cppy 1.2.1-GCCcore-11.3.0 live
CST-Studio-Suite 2022.SP4-GCCcore-10.3.0-Java-11 live
CST-Studio-Suite 2022.SP4-GCCcore-10.3.0-Java-11 test
ctffind 4.1.14-fosscuda-2020b live
ctffind 4.1.14-fosscuda-2020b test
CUDA 12.1.1 live
CUDAcore 11.2.1 test
cuDNN 8.7.0.84-CUDA-11.8.0 live
CuPy 11.6.0-foss-2022a-CUDA-11.7.0 live
cURL 8.0.1-GCCcore-12.3.0 live
cuTENSOR 1.6.1.5-CUDA-11.7.0 live
Cython 0.29.22-GCCcore-10.2.0 live
Cython 0.29.22-GCCcore-10.2.0 test
dask 2022.10.0-foss-2022a live
datasets 2.6.1-foss-2021a-CUDA-11.3.1 live
DB 18.1.40-GCCcore-12.2.0 live
DBus 1.13.18-GCCcore-10.3.0 live
deepdiff 5.8.1-GCCcore-11.3.0 live
dm-tree 0.1.6-GCCcore-10.3.0 live
doppio beta6 live
double-conversion 3.1.5-GCCcore-10.3.0 live
Doxygen 1.9.5-GCCcore-12.2.0 live
Eigen 3.4.0-GCCcore-12.2.0 live
einops 0.4.1-GCCcore-11.3.0 live
elfutils 0.187-GCCcore-11.3.0 live
ELPA 2021.05.001-foss-2021a live
expat 2.4.9-GCCcore-12.2.0 live
expecttest 0.1.4-GCCcore-12.2.0 live
FBPIC 0.20.3-fosscuda-2020b test
FFmpeg 5.1.2-GCCcore-12.2.0 live
ffnvcodec 11.1.5.2 live
FFTW 3.3.10-NVHPC-22.7-CUDA-11.7.0 live
FFTW.MPI 3.3.10-nvompi-2022.07 live
Fiji 20201104-1356 live
Fiji 20201104-1356 test
FLAC 1.3.4-GCCcore-11.3.0 live
Flask 1.1.4-GCCcore-10.3.0 live
flatbuffers 2.0.7-GCCcore-11.3.0 live
flatbuffers-python 2.0-GCCcore-10.3.0 live
flex 2.6.4 live
flex 2.6.4 test
FlexiBLAS 3.3.1-GCC-12.3.0 live
FLTK 1.3.6-GCCcore-10.3.0 live
fontconfig 2.14.1-GCCcore-12.2.0 live
foss 2023a live
fosscuda 2020b live
fosscuda 2020b test
FreeImage 3.18.0-GCCcore-10.3.0 test
freetype 2.12.1-GCCcore-12.2.0 live
FriBidi 1.0.12-GCCcore-12.2.0 live
GCC 12.3.0 live
GCCcore 12.3.0 live
gcccuda 2020b live
gcccuda 2020b test
GDAL 3.5.0-foss-2022a live
GDB 10.1-GCCcore-10.2.0 test
Gdk-Pixbuf 2.42.8-GCCcore-11.3.0 live
GDRCopy 2.3.1-GCCcore-12.3.0 live
GEOS 3.10.3-GCC-11.3.0 live
gettext 0.21.1 live
gfbf 2022b live
Ghostscript 9.56.1-GCCcore-11.3.0 live
giflib 5.2.1-GCCcore-11.3.0 live
git 2.38.1-GCCcore-12.2.0-nodocs live
GLib 2.72.1-GCCcore-11.3.0 live
GLM 0.9.9.8-GCCcore-10.3.0 test
GLPK 5.0-GCCcore-11.3.0 live
GMP 6.2.1-GCCcore-12.2.0 live
gmpy2 2.1.2-GCC-12.2.0 live
gnuplot 5.4.2-GCCcore-10.3.0 live
GObject-Introspection 1.72.0-GCCcore-11.3.0 live
gompi 2023a live
gompic 2020b live
gompic 2020b test
googletest 1.11.0-GCCcore-11.3.0 live
gperf 3.1-GCCcore-12.2.0 live
gpustat 0.6.0-gcccuda-2020b live
gpustat 0.6.0-gcccuda-2020b test
groff 1.22.4-GCCcore-12.2.0 live
GROMACS 2023.1-foss-2022a-CUDA-11.7.0 live
GSL 2.7-GCC-11.3.0 live
GST-plugins-base 1.18.4-GCC-10.3.0 live
GStreamer 1.18.4-GCC-10.3.0 live
GTK+ 3.24.23-GCCcore-10.2.0 live
GTK+ 3.24.23-GCCcore-10.2.0 test
GTK2 2.24.33-GCCcore-11.3.0 live
GTK3 3.24.29-GCCcore-10.3.0 live
gzip 1.12-GCCcore-12.2.0 live
h5py 3.7.0-foss-2022a live
HarfBuzz 4.2.1-GCCcore-11.3.0 live
HDBSCAN 0.8.26-fosscuda-2020b test
HDF 4.2.15-GCCcore-11.3.0 live
HDF5 1.12.2-gompi-2022a live
hdf5plugin 4.1.3-foss-2022a live
help2man 1.47.4 live
help2man 1.47.4 test
HH-suite 3.3.0-gompi-2021a live
HMMER 3.3.2-gompi-2021a live
Horovod 0.28.0-foss-2022a-CUDA-11.7.0-PyTorch-2.0.1 live
HPL 2.3-intel-2021.03 test
hwloc 2.9.1-GCCcore-12.3.0 live
hypothesis 6.68.2-GCCcore-12.2.0 live
Hypre 2.21.0-fosscuda-2020b test
ICU 71.1-GCCcore-11.3.0 live
iimpi 2021.03 test
IJulia 1.24.0-Julia-1.9.2 live
imageio 2.22.2-foss-2022a live
imageio-ffmpeg 0.4.5-fosscuda-2020b test
ImageMagick 7.1.0-37-GCCcore-11.3.0 live
imkl 2021.2.0-iimpi-2021.03 test
impi 2021.2.0-intel-compilers-2021.2.0 test
intel 2021.03 test
intel-compilers 2021.2.0 test
intltool 0.51.0-GCCcore-12.2.0 live
IOR 3.3.0-gompi-2021a test
IPython 8.5.0-GCCcore-11.3.0 live
IRkernel 1.2-fosscuda-2020b test
ISL 0.23-GCCcore-10.2.0 test
ITK 5.2.1-foss-2022a live
JasPer 2.0.33-GCCcore-11.3.0 live
Java 11.0.2 live
Java 11.0.2 test
jax 0.3.9-foss-2021a-CUDA-11.3.1 live
jbigkit 2.1-GCCcore-12.2.0 live
JsonCpp 1.9.4-GCCcore-10.3.0 live
Julia 1.9.2-linux-x86_64 live
JupyterLab 2.2.8-GCCcore-10.2.0 live
JupyterLab 2.2.8-GCCcore-10.2.0 test
Kalign 3.3.1-GCCcore-10.3.0 live
Keras 2.4.3-fosscuda-2020b-TensorFlow-2.5.0 live
Keras 2.4.3-fosscuda-2020b-TensorFlow-2.5.0 test
kim-api 2.2.1-GCCcore-10.2.0 live
kim-api 2.2.1-GCCcore-10.2.0 test
LAME 3.100-GCCcore-12.2.0 live
LAMMPS 29Oct2020-fosscuda-2020b-kokkos live
LAMMPS 29Oct2020-fosscuda-2020b-kokkos test
libarchive 3.6.2-GCCcore-12.3.0 live
libcerf 1.17-GCCcore-10.3.0 live
libdeflate 1.15-GCCcore-12.2.0 live
libdrm 2.4.110-GCCcore-11.3.0 live
libepoxy 1.5.8-GCCcore-10.3.0 live
libevent 2.1.12-GCCcore-12.3.0 live
libfabric 1.18.0-GCCcore-12.3.0 live
libffi 3.4.4-GCCcore-12.3.0 live
libgd 2.3.1-GCCcore-10.3.0 live
libgeotiff 1.7.1-GCCcore-11.3.0 live
libgit2 1.4.3-GCCcore-11.3.0 live
libGLU 9.0.2-GCCcore-11.3.0 live
libglvnd 1.4.0-GCCcore-11.3.0 live
libgpuarray 0.7.6-fosscuda-2020b live
libgpuarray 0.7.6-fosscuda-2020b test
libiconv 1.17-GCCcore-12.2.0 live
libjpeg-turbo 2.1.4-GCCcore-12.2.0 live
libMesh 1.6.1-fosscuda-2020b test
libogg 1.3.5-GCCcore-11.3.0 live
libopus 1.3.1-GCCcore-11.3.0 live
libpciaccess 0.17-GCCcore-12.3.0 live
libpng 1.6.38-GCCcore-12.2.0 live
libreadline 8.2-GCCcore-12.3.0 live
libsndfile 1.1.0-GCCcore-11.3.0 live
libsodium 1.0.18-GCCcore-11.3.0 live
LibTIFF 4.4.0-GCCcore-12.2.0 live
libtirpc 1.3.2-GCCcore-11.3.0 live
libtool 2.4.7-GCCcore-12.3.0 live
libunwind 1.6.2-GCCcore-11.3.0 live
libvorbis 1.3.7-GCCcore-11.3.0 live
libwebp 1.2.4-GCCcore-11.3.0 live
libxml2 2.11.4-GCCcore-12.3.0 live
libxslt 1.1.34-GCCcore-11.3.0 live
libyaml 0.2.5-GCCcore-12.2.0 live
Linaro-Forge 23.0.1 live
LittleCMS 2.13.1-GCCcore-11.3.0 live
LLVM 14.0.3-GCCcore-11.3.0 live
LMDB 0.9.28-GCCcore-10.3.0 live
Lua 5.4.3-GCCcore-10.3.0 live
lxml 4.9.1-GCCcore-11.3.0 live
lz4 1.9.4-GCCcore-12.2.0 live
M4 1.4.19 live
magma 2.6.2-foss-2022b-CUDA-11.8.0 live
make 4.4.1-GCCcore-12.3.0 live
makeinfo 6.7-GCCcore-10.3.0-minimal live
Mako 1.2.0-GCCcore-11.3.0 live
MATIO 1.5.21-GCCcore-10.3.0 test
matplotlib 3.5.2-foss-2022a live
Mesa 22.0.3-GCCcore-11.3.0 live
Meson 0.64.0-GCCcore-12.2.0 live
METIS 5.1.0-GCCcore-10.3.0 live
METIS 5.1.0-GCCcore-10.3.0 test
Miniconda3 4.10.3 live
Miniconda3 4.10.3 test
MNE-Python 0.24.1-foss-2021a live
molmod 1.4.5-fosscuda-2020b live
molmod 1.4.5-fosscuda-2020b test
MONAI 1.2.0-foss-2022a-CUDA-11.7.0 live
motif 2.3.8-GCCcore-10.3.0 live
motif 2.3.8-GCCcore-10.3.0 test
MotionCor2 1.4.7-GCCcore-10.3.0-CUDA-11.3.1 live
MPC 1.3.0-GCCcore-12.2.0 live
MPFR 4.2.0-GCCcore-12.2.0 live
mrcfile 1.3.0-fosscuda-2020b live
mrcfile 1.3.0-fosscuda-2020b test
MUMPS 5.3.5-fosscuda-2020b-metis test
NAMD 3.0alpha13-CUDA-11.3.1 live
NASM 2.15.05-GCCcore-12.2.0 live
NCCL 2.18.3-GCCcore-12.3.0-CUDA-12.1.1 live
ncdf4 1.17-fosscuda-2020b-R-4.0.3 test
ncurses 6.3 live
netCDF 4.9.0-gompi-2022a live
netCDF-Fortran 4.5.3-gompi-2021a live
nettle 3.8-GCCcore-11.3.0 live
networkx 3.0-gfbf-2022b live
NiBabel 4.0.2-foss-2022a live
Ninja 1.11.1-GCCcore-12.2.0 live
nlohmann_json 3.10.5-GCCcore-11.3.0 live
NLopt 2.7.1-GCCcore-11.3.0 live
nodejs 16.15.1-GCCcore-11.3.0 live
Nsight-Compute 2022.1.1 live
Nsight-Compute 2022.1.1 test
Nsight-Systems 2022.2.1-GCCcore-10.2.0 live
Nsight-Systems 2022.2.1-GCCcore-10.2.0 test
NSPR 4.30-GCCcore-10.3.0 live
NSS 3.65-GCCcore-10.3.0 live
nsync 1.24.0-GCCcore-10.3.0 live
numactl 2.0.16-GCCcore-12.3.0 live
numba 0.53.1-fosscuda-2020b live
numba 0.53.1-fosscuda-2020b test
nv-codec-headers 11.1.5.1 live
nv-codec-headers 11.1.5.1 test
NVHPC 22.2 test
nvofbf 2022.07 live
nvompi 2022.07 live
nvtop 1.2.1-GCCcore-10.2.0 live
nvtop 1.2.1-GCCcore-10.2.0 test
occt 7.5.0p1-foss-2021a test
OpenBLAS 0.3.23-GCC-12.3.0 live
OpenCV 4.5.1-fosscuda-2020b-contrib live
OpenCV 4.5.1-fosscuda-2020b-contrib test
OpenEXR 2.5.5-GCCcore-10.2.0 live
OpenEXR 2.5.5-GCCcore-10.2.0 test
OpenJPEG 2.5.0-GCCcore-11.3.0 live
OpenMPI 4.1.5-GCC-12.3.0 live
OpenPGM 5.2.122-GCCcore-11.3.0 live
OpenSlide 3.4.1-GCCcore-11.3.0-largefiles live
openslide-python 1.2.0-GCCcore-11.3.0 live
OpenSSL 1.1 live
OpenSSL 1.1 test
OptiX 7.0.0 test
osl-dynamics 1.2.0-foss-2021a-CUDA-11.3.1 live
OSU-Micro-Benchmarks 7.2-gompi-2023a-CUDA-12.1.1 live
Pango 1.50.7-GCCcore-11.3.0 live
ParaView 5.10.1 test
PCRE 8.45-GCCcore-11.3.0 live
PCRE2 10.40-GCCcore-11.3.0 live
Perl 5.36.1-GCCcore-12.3.0 live
PETSc 3.14.4-fosscuda-2020b test
Pillow 9.4.0-GCCcore-12.2.0 live
Pillow-SIMD 9.2.0-GCCcore-11.3.0 live
pixman 0.40.0-GCCcore-11.3.0 live
pkg-config 0.29.2-GCCcore-11.3.0 live
pkgconf 1.8.0 live
pkgconfig 1.5.5-GCCcore-11.3.0-python live
PLUMED 2.6.2-fosscuda-2020b live
PLUMED 2.6.2-fosscuda-2020b test
PMIx 4.2.4-GCCcore-12.3.0 live
pocl 1.6-gcccuda-2020b test
PostgreSQL 13.2-GCCcore-10.2.0 test
PROJ 9.0.0-GCCcore-11.3.0 live
protobuf 23.0-GCCcore-12.2.0 live
protobuf-python 4.23.0-GCCcore-12.2.0 live
pybind11 2.10.3-GCCcore-12.2.0 live
pydicom 2.3.0-GCCcore-11.3.0 live
pyFFTW 0.12.0-fosscuda-2020b test
pyflamegpu 2.0.0-rc-foss-2021a-CUDA-11.3.1 live
pytest-xdist 2.3.0-GCCcore-10.3.0 live
Python 3.11.3-GCCcore-12.3.0 live
PyTorch 2.1.2-foss-2022b-CUDA-11.8.0 live
PyTorch-Geometric 2.0.4-foss-2021a-CUDA-11.3.1 live
PyTorch-Lightning 2.0.2-foss-2022a-CUDA-11.7.0 live
PyTorch3D 0.5.0-fosscuda-2020b-PyTorch-1.8.1 live
PyTorch3D 0.5.0-fosscuda-2020b-PyTorch-1.8.1 test
PyYAML 6.0-GCCcore-12.2.0 live
Qhull 2020.2-GCCcore-11.3.0 live
QIO 20210607-GCCcore-10.2.0 test
QMP 2.5.3-GCCcore-10.2.0 test
Qt5 5.15.2-GCCcore-10.3.0 live
R 4.2.3-foss-2022a live
R-bundle-Bioconductor 3.12-fosscuda-2020b-R-4.0.3 test
RapidJSON 1.1.0-GCCcore-10.3.0 live
RDFlib 6.1.1-GCCcore-10.3.0 live
RE2 2022-02-01-GCCcore-10.3.0 live
re2c 2.1.1-GCCcore-10.3.0 live
RELION 4.0.1-foss-2021a-CUDA-11.3.1 live
ResMap 1.1.4 live
ResMap 1.1.4 test
Rust 1.65.0-GCCcore-12.2.0 live
ScaFaCoS 1.0.1-fosscuda-2020b live
ScaFaCoS 1.0.1-fosscuda-2020b test
ScaLAPACK 2.2.0-nvompi-2022.07-fb live
scikeras 0.4.1-fosscuda-2020b live
scikeras 0.4.1-fosscuda-2020b test
scikit-build 0.11.1-fosscuda-2020b live
scikit-build 0.11.1-fosscuda-2020b test
scikit-image 0.19.3-foss-2022a live
scikit-learn 0.24.2-foss-2021a live
SciPy-bundle 2023.02-gfbf-2022b live
SCOTCH 6.1.0-gompic-2020b test
SDL2 2.26.3-GCCcore-12.2.0 live
Seaborn 0.11.2-foss-2021a live
Siesta 4.1.5-foss-2021a live
snappy 1.1.8-GCCcore-10.3.0 live
SOCI 4.0.1-GCC-10.2.0 test
spglib-python 1.16.1-foss-2021a live
SQLite 3.42.0-GCCcore-12.3.0 live
SuiteSparse 5.10.1-foss-2021a-METIS-5.1.0 test
SUNDIALS 5.8.0-foss-2021a test
SWIG 4.0.2-GCCcore-10.3.0 live
SWIG 4.0.2-GCCcore-10.3.0 test
sympy 1.11.1-foss-2022b live
Szip 2.1.1-GCCcore-11.3.0 live
tbb 2020.3-GCCcore-10.3.0 live
tbb 2020.3-GCCcore-10.3.0 test
Tcl 8.6.13-GCCcore-12.3.0 live
tcsh 6.22.04-GCCcore-10.3.0 live
tensorboard 2.10.0-foss-2022a live
tensorboardX 2.4-fosscuda-2020b-PyTorch-1.8.1 live
tensorboardX 2.4-fosscuda-2020b-PyTorch-1.8.1 test
TensorFlow 2.6.0-foss-2021a-CUDA-11.3.1 live
TensorFlow-Datasets 4.7.0-foss-2021a-CUDA-11.3.1 live
tensorflow-probability 0.14.0-foss-2021a-CUDA-11.3.1 live
Theano 1.1.2-fosscuda-2020b-PyMC live
Theano 1.1.2-fosscuda-2020b-PyMC test
Tk 8.6.12-GCCcore-11.3.0 live
Tkinter 3.10.4-GCCcore-11.3.0 live
torchvision 0.15.2-foss-2022a-CUDA-11.7.0 live
tqdm 4.64.0-GCCcore-11.3.0 live
Trilinos 13.2.0-foss-2021a test
typing-extensions 3.10.0.0-GCCcore-10.3.0 live
UCC 1.2.0-GCCcore-12.3.0 live
UCC-CUDA 1.2.0-GCCcore-12.3.0-CUDA-12.1.1 live
UCX 1.14.1-GCCcore-12.3.0 live
UCX-CUDA 1.14.1-GCCcore-12.3.0-CUDA-12.1.1 live
UDUNITS 2.2.28-GCCcore-11.3.0 live
UnZip 6.0-GCCcore-12.3.0 live
utf8proc 2.6.1-GCCcore-10.3.0 live
util-linux 2.38.1-GCCcore-12.2.0 live
Valgrind 3.16.1-gompic-2020b live
Valgrind 3.16.1-gompic-2020b test
VASP 6.3.2-nvofbf-2022.07 live
Voro++ 0.4.6-GCCcore-10.2.0 live
Voro++ 0.4.6-GCCcore-10.2.0 test
VTK 9.2.2-foss-2022a live
wxWidgets 3.1.5-GCC-10.3.0 live
X11 20221110-GCCcore-12.2.0 live
x264 20230226-GCCcore-12.2.0 live
x265 3.5-GCCcore-12.2.0 live
xorg-macros 1.20.0-GCCcore-12.3.0 live
xprop 1.2.5-GCCcore-10.3.0 live
Xvfb 21.1.3-GCCcore-11.3.0 live
XZ 5.4.2-GCCcore-12.3.0 live
YACS 0.1.8-GCCcore-10.3.0 live
yaff 1.6.0-fosscuda-2020b live
yaff 1.6.0-fosscuda-2020b test
Yasm 1.3.0-GCCcore-12.2.0 live
Z3 4.10.2-GCCcore-11.3.0 live
ZeroMQ 4.3.4-GCCcore-11.3.0 live
Zip 3.0-GCCcore-10.3.0 live
zlib 1.2.13 live
zstd 1.5.2-GCCcore-12.2.0 live