snakemake 8.4.2-foss-2023a

The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.

Accessing snakemake 8.4.2-foss-2023a

To load the module for snakemake 8.4.2-foss-2023a please use this command on Baskerville:

📋 module load bask-apps/live
module load snakemake/8.4.2-foss-2023a

Bask Apps Env

live

Extensions

• argparse-dataclass-2.0.0
• conda-inject-1.3.1
• ConfigArgParse 1.7
• connection-pool-0.0.3
• datrie 0.8.2
• dpath 2.1.6
• fastjsonschema 2.19.1
• humanfriendly 10.0
• immutables 0.20
• jupyter-core-5.7.1
• nbformat 5.9.2
• plac 1.4.2
• reretry 0.11.8
• smart-open-6.4.0
• snakemake 8.4.2
• snakemake-executor-plugin-cluster-generic-1.0.7
• snakemake-executor-plugin-cluster-sync-0.1.3
• snakemake-executor-plugin-flux-0.1.0
• snakemake-executor-plugin-slurm-0.2.1
• snakemake-executor-plugin-slurm-jobstep-0.1.10
• snakemake-interface-common-1.15.2
• snakemake-interface-executor-plugins-8.2.0
• snakemake-interface-storage-plugins-3.0.0
• stopit 1.1.2
• throttler 1.2.2
• toposort 1.10
• yte 1.5.4

More Information

For more information visit the snakemake website.

Dependencies

This version of snakemake has a direct dependency on: foss/2023a GitPython/3.1.40-GCCcore-12.3.0 IPython/8.14.0-GCCcore-12.3.0 PuLP/2.8.0-foss-2023a Python/3.11.3-GCCcore-12.3.0 Python-bundle-PyPI/2023.06-GCCcore-12.3.0 PyYAML/6.0-GCCcore-12.3.0 SciPy-bundle/2023.07-gfbf-2023a wrapt/1.15.0-gfbf-2023a

Last modified on 7th January 2026