starfile 0.5.6-foss-2023a

starfile is a Python implementation of the STAR file format designed principally for compatibility with RELION format STAR files. It allows STAR files to be created and opened easily using a very simple API, exposing data blocks as pandas DataFrame objects. This library aims to allow users and developers to read and write STAR files in Python as easily as possible as well as to encourage further analysis of data within the scientific Python (SciPy) ecosystem. You can use it interactively to inspect/explore files or in scripts and larger software packages to provide basic STAR file I/O functions.

Accessing starfile 0.5.6-foss-2023a

To load the module for starfile 0.5.6-foss-2023a please use this command on Baskerville:

📋 module load bask-apps/live
module load starfile/0.5.6-foss-2023a

Bask Apps Env

live

Extensions

• pandas 2.1.1
• starfile 0.5.6

More Information

For more information visit the starfile website.

Dependencies

This version of starfile has a direct dependency on: Arrow/14.0.1-gfbf-2023a foss/2023a hatchling/1.18.0-GCCcore-12.3.0 Python/3.11.3-GCCcore-12.3.0 SciPy-bundle/2023.07-gfbf-2023a

Required By

This version of starfile is a direct dependent of: DynaMight/0.0.0.20240319.eef4aa6-foss-2023a-CUDA-12.1.1 RELION/b5.0.0.20240827.12cf15d-foss-2023a-CUDA-12.1.1

Last modified on 17th October 2024