topaz 0.2.5.20231120-foss-2023a-CUDA-12.1.1

A pipeline for particle detection in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Topaz also includes methods for micrograph denoising using deep de- noising models.

Accessing topaz 0.2.5.20231120-foss-2023a-CUDA-12.1.1

To load the module for topaz 0.2.5.20231120-foss-2023a-CUDA-12.1.1 please use this command on Baskerville:

📋 module load bask-apps/live
module load topaz/0.2.5.20231120-foss-2023a-CUDA-12.1.1

Bask Apps Env

live

More Information

For more information visit the topaz website.

Dependencies

This version of topaz has a direct dependency on: CUDA/12.1.1 foss/2023a Python/3.11.3-GCCcore-12.3.0 PyTorch-bundle/2.1.2-foss-2023a-CUDA-12.1.1 scikit-image/0.22.0-foss-2023a scikit-learn/1.3.1-gfbf-2023a SciPy-bundle/2023.07-gfbf-2023a

Other Versions

These versions of topaz are available on Baskerville. These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 17th October 2024