R-bundle-Bioconductor 3.12-fosscuda-2020b-R-4.0.3

Bioconductor provides tools for the analysis and coprehension of high-throughput genomic data.

Accessing R-bundle-Bioconductor 3.12-fosscuda-2020b-R-4.0.3

To load the module for R-bundle-Bioconductor 3.12-fosscuda-2020b-R-4.0.3 please use this command on Baskerville:

📋 module load bask-apps/test
module load R-bundle-Bioconductor/3.12-fosscuda-2020b-R-4.0.3

Bask Apps Env

test

Extensions

• admisc 0.11
• affxparser 1.62.0
• affy 1.68.0
• affycoretools 1.62.0
• affyio 1.60.0
• AgiMicroRna 2.40.0
• agricolae-1.3-3
• ALDEx2 1.22.0
• ALL 1.32.0
• annaffy 1.62.0
• annotate 1.68.0
• AnnotationDbi 1.52.0
• AnnotationFilter 1.14.0
• AnnotationForge 1.32.0
• AnnotationHub 2.22.0
• aroma.affymetrix 3.2.0
• aroma.apd 0.6.0
• aroma.core 3.2.2
• aroma.light 3.20.0
• ash-1.0-15
• ATACseqQC 1.14.4
• aws.s3 0.3.21
• aws.signature 0.6.0
• ballgown 2.22.0
• batchelor 1.6.2
• baySeq 2.24.0
• beachmat 2.6.4
• BH-1.75.0-0
• Biobase 2.50.0
• BiocFileCache 1.14.0
• BiocGenerics 0.36.0
• BiocManager 1.30.10
• BiocNeighbors 1.8.2
• BiocParallel 1.24.1
• BiocSingular 1.6.0
• BiocStyle 2.18.1
• BiocVersion 3.12.0
• biomaRt 2.46.3
• biomformat 1.18.0
• Biostrings 2.58.0
• biovizBase 1.38.0
• blme-1.0-5
• bluster 1.0.0
• bookdown 0.21
• BSgenome 1.58.0
• BSgenome.Cfamiliaris.UCSC.canFam3 1.4.0
• BSgenome.Hsapiens.UCSC.hg19 1.4.3
• BSgenome.Hsapiens.UCSC.hg38 1.4.3
• BSgenome.Mmusculus.UCSC.mm10 1.4.0
• bumphunter 1.32.0
• CAMERA 1.46.0
• Category 2.56.0
• ccdata 1.16.0
• ccmap 1.16.0
• CGHbase 1.50.0
• ChIPpeakAnno 3.24.1
• CNEr 1.26.0
• coloc-3.2-1
• colorRamps 2.3
• ComplexHeatmap 2.6.2
• ConsensusClusterPlus 1.54.0
• conumee 1.24.0
• crossmeta 1.16.1
• cummeRbund 2.32.0
• cytolib 2.2.1
• CytoML 2.2.1
• dada2 1.18.0
• DeconRNASeq 1.32.0
• DEGseq 1.44.0
• DelayedArray 0.16.1
• DelayedMatrixStats 1.12.3
• derfinder 1.24.2
• derfinderHelper 1.24.1
• DESeq2 1.30.0
• diffcyt 1.10.0
• DirichletMultinomial 1.32.0
• DNAcopy 1.64.0
• dqrng 0.2.1
• DRIMSeq 1.18.0
• DropletUtils 1.10.3
• dupRadar 1.20.0
• DynDoc 1.68.0
• EBImage 4.32.0
• edgeR 3.32.1
• egg 0.4.5
• emmeans 1.5.4
• EnsDb.Hsapiens.v75 2.99.0
• EnsDb.Hsapiens.v86 2.99.0
• ensembldb 2.14.0
• estimability 1.3
• ExperimentHub 1.16.0
• extraDistr 1.9.1
• fda 5.1.9
• FDb.InfiniumMethylation.hg19 2.2.0
• fds 1.8
• fgsea 1.16.0
• flowClust 3.28.0
• flowCore 2.2.0
• FlowSOM 1.22.0
• FlowSorted.Blood.EPIC 1.8.0
• FlowSorted.CordBloodCombined.450k 1.6.0
• flowStats 4.2.0
• flowViz 1.54.0
• flowWorkspace 4.2.0
• FRASER 1.2.1
• gcrma 2.62.0
• gdsfmt 1.26.1
• GenABEL-1.8-0
• GenABEL.data 1.0.0
• genefilter 1.72.1
• geneLenDataBase 1.26.0
• geneplotter 1.68.0
• GENESIS 2.20.1
• GENIE3 1.12.0
• GenomeInfoDb 1.26.2
• GenomeInfoDbData 1.2.4
• GenomicAlignments 1.26.0
• GenomicFeatures 1.42.1
• GenomicFiles 1.26.0
• GenomicRanges 1.42.0
• GenomicScores 2.2.0
• genoset 1.45.1
• GEOquery 2.58.0
• ggbio 1.38.0
• ggcyto 1.18.0
• ggdendro 0.1.22
• ggseqlogo 0.1
• ggthemes 4.2.4
• GLAD 2.54.0
• Glimma 2.0.0
• GlobalAncova 4.8.0
• globaltest 5.44.0
• GO.db 3.12.1
• goseq 1.42.0
• GOstats 2.56.0
• graph 1.68.0
• GSEABase 1.52.1
• gsmoothr 0.1.7
• GSVA 1.38.2
• Gviz 1.34.0
• GWASExactHW 1.01
• GWASTools 1.36.0
• HDF5Array 1.18.1
• hdrcde 3.4
• heatmaply 1.2.1
• hgu133plus2.db 3.2.3
• HMMcopy 1.32.0
• Homo.sapiens 1.3.1
• IHW 1.18.0
• IlluminaHumanMethylation450kanno.ilmn12.hg19 0.6.0
• IlluminaHumanMethylation450kmanifest 0.4.0
• IlluminaHumanMethylationEPICanno.ilm10b2.hg19 0.6.0
• IlluminaHumanMethylationEPICanno.ilm10b4.hg19 0.6.0
• IlluminaHumanMethylationEPICmanifest 0.3.0
• illuminaio 0.32.0
• impute 1.64.0
• interactiveDisplayBase 1.28.0
• IRanges 2.24.1
• isva 1.9
• KEGG.db 3.2.4
• KEGGgraph 1.50.0
• KEGGprofile 1.32.0
• KEGGREST 1.30.1
• LEA 3.2.0
• limma 3.46.0
• lpsymphony 1.18.0
• lsa 0.73.2
• lumi 2.42.0
• marray 1.68.0
• maSigPro 1.62.0
• MassSpecWavelet 1.56.0
• mathjaxr-1.2-0
• MatrixGenerics 1.2.0
• MEDIPS 1.42.0
• metagenomeSeq 1.32.0
• metaMA 3.1.2
• metap 1.4
• MethylSeekR 1.30.0
• methylumi 2.36.0
• Mfuzz 2.50.0
• minfi 1.36.0
• missMethyl 1.24.0
• mixOmics 6.14.0
• MLInterfaces 1.70.0
• MotifDb 1.32.0
• motifmatchr 1.12.0
• motifStack 1.34.0
• MsCoreUtils 1.2.0
• MSnbase 2.16.1
• MultiDataSet 1.18.1
• multtest 2.46.0
• muscat 1.4.0
• mutoss-0.1-12
• mzID 1.28.0
• mzR 2.24.1
• NADA-1.6-1.1
• ncdf4 1.17
• ncdfFlow 2.36.0
• NOISeq 2.34.0
• oligo 1.54.1
• oligoClasses 1.52.0
• ontologyIndex 2.7
• openCyto 2.2.0
• org.Hs.eg.db 3.12.0
• org.Mm.eg.db 3.12.0
• org.Rn.eg.db 3.12.0
• OrganismDbi 1.32.0
• OUTRIDER 1.8.0
• pcaMethods 1.82.0
• perm-1.0-0.0
• PFAM.db 3.12.0
• phyloseq 1.34.0
• pmp 1.2.0
• polyester 1.26.0
• poweRlaw 0.70.6
• preprocessCore 1.52.1
• pRoloc 1.30.0
• pRolocdata 1.28.0
• pRolocGUI 2.0.0
• ProtGenerics 1.22.0
• PRROC 1.3.1
• PSCBS 0.65.0
• PureCN 1.20.0
• qap-0.1-1
• quantsmooth 1.56.0
• qvalue 2.22.0
• R.devices 2.17.0
• R.filesets 2.14.0
• R.huge 0.9.0
• rainbow 3.6
• randomcoloR 1.1.0.1
• rARPACK-0.11-0
• RBGL 1.66.0
• RcppAnnoy 0.0.18
• RcppHNSW 0.3.0
• RcppZiggurat 0.1.6
• regioneR 1.22.0
• Repitools 1.36.0
• ReportingTools 2.30.0
• ResidualMatrix 1.0.0
• Rfast 2.0.1
• rGADEM 2.38.0
• Rgraphviz 2.34.0
• rhdf5 2.34.0
• rhdf5filters 1.2.0
• Rhdf5lib 1.12.1
• Rhtslib 1.22.0
• Ringo 1.54.0
• RNASeqPower 1.30.0
• ROC 1.66.0
• ropls 1.22.0
• RProtoBufLib 2.2.0
• Rsamtools 2.6.0
• Rsolnp 1.16
• RSpectra-0.16-0
• Rsubread 2.4.2
• rsvd 1.0.3
• rtracklayer 1.50.0
• S4Vectors 0.28.1
• samr 3.0
• SC3 1.18.0
• SCANVIS 1.4.0
• scater 1.18.3
• scattermore 0.7
• scran 1.18.5
• scrime 1.3.5
• sctransform 0.3.2
• scuttle 1.0.4
• SeqArray 1.30.0
• seqLogo 1.56.0
• SeqVarTools 1.28.1
• seriation-1.2-9
• Seurat 4.0.0
• SeuratObject 4.0.0
• shinyBS 0.61
• shinydashboardPlus 0.7.5
• shinyFiles 0.9.0
• shinyhelper 0.3.2
• shinypanel 0.1.4
• shinyWidgets 0.5.7
• ShortRead 1.48.0
• siggenes 1.64.0
• Signac 1.1.1
• SingleCellExperiment 1.12.0
• SingleR 1.4.1
• sitmo 2.0.1
• SMVar 1.3.3
• SNPRelate 1.24.0
• snpStats 1.40.0
• sparseMatrixStats 1.2.1
• SPIA 2.42.0
• SSPA 2.30.0
• stageR 1.12.0
• struct 1.2.0
• structToolbox 1.2.0
• SummarizedExperiment 1.20.0
• sva 3.38.0
• TFBSTools 1.28.0
• TFMPvalue 0.0.8
• tkWidgets 1.68.0
• truncnorm-1.0-8
• TSP-1.1-10
• TxDb.Hsapiens.UCSC.hg19.knownGene 3.2.2
• TxDb.Mmusculus.UCSC.mm10.knownGene 3.10.0
• tximport 1.18.0
• uwot 0.1.10
• variancePartition 1.20.0
• VariantAnnotation 1.36.0
• venn 1.9
• vsn 3.58.0
• wateRmelon 1.34.0
• widgetTools 1.68.0
• Wrench 1.8.0
• xcms 3.12.0
• xgboost 1.3.2.1
• XVector 0.30.0
• zCompositions 1.3.4
• zlibbioc 1.36.0

More Information

For more information visit the R-bundle-Bioconductor website.

Dependencies

This version of R-bundle-Bioconductor has a direct dependency on: Boost/1.74.0-GCC-10.2.0 fosscuda/2020b GSL/2.6-GCC-10.2.0 HDF5/1.10.7-gompic-2020b ncdf4/1.17-fosscuda-2020b-R-4.0.3 R/4.0.3-fosscuda-2020b

Last modified on 31st August 2021